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Empirical Inference Talk 2006

Machine Learning Algorithms for Polymorphism Detection

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Empirical Inference
Bernhard Schölkopf
  • Director
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Empirical Inference
Gabriele Schweikert
Research Group Leader Computational Epigenomics University of Dundee and Universität Tübingen
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Empirical Inference
Gunnar Rätsch

Analyzing resequencing array data using machine learning, we obtain a genome-wide inventory of polymorphisms in 20 wild strains of Arabidopsis thaliana, including 750,000 single nucleotide poly- morphisms (SNPs) and thousands of highly polymorphic regions and deletions. We thus provide an unprecedented resource for the study of natural variation in plants.

Author(s): Schweikert, G. and Zeller, G. and Clark, R. and Ossowski, S. and Warthmann, N. and Shinn, P. and Frazer, K. and Ecker, J. and Huson, D. and Weigel, D. and Schölkopf, B. and Rätsch, G.
Year: 2006
Month: August
Day: 0
Bibtex Type: Talk (talk)
Digital: 0
Electronic Archiving: grant_archive
Event Name: 2nd ISCB Student Council Symposium
Event Place: Fortaleza, Brazil
Language: en
Organization: Max-Planck-Gesellschaft
School: Biologische Kybernetik
Links:

BibTex 

@talk{4112,
  title = {Machine Learning Algorithms for Polymorphism Detection},
  abstract = {Analyzing resequencing array data using machine learning, we obtain a genome-wide inventory of
  polymorphisms in 20 wild strains of Arabidopsis thaliana, including 750,000 single nucleotide poly-
  morphisms (SNPs) and thousands of highly polymorphic regions and deletions. We thus provide an
  unprecedented resource for the study of natural variation in plants.},
  organization = {Max-Planck-Gesellschaft},
  school = {Biologische Kybernetik},
  month = aug,
  year = {2006},
  slug = {4112},
  author = {Schweikert, G. and Zeller, G. and Clark, R. and Ossowski, S. and Warthmann, N. and Shinn, P. and Frazer, K. and Ecker, J. and Huson, D. and Weigel, D. and Sch{\"o}lkopf, B. and R{\"a}tsch, G.},
  month_numeric = {8}
}